PUBLICATIONS

Braundmeier-Fleming A, Russell NT, Yang W, Nas MY, Yaggie RE, Berry M, Bachrach L, Flury SC, Marko DS, Bushell CB, Welge ME, White BA, Schaeffer AJ, Klumpp DJ. Stool-based biomarkers of interstitial cystitis/bladder pain syndrome. Sci Rep. 2016 May 18;6:26083. PMCID: PMC4870565.

D. Cox, et. al., New Media Women in the Arts:  An Historical Survey of Innovative Collaboration. Colleen Bushell featured in book published by University of Illinois Press. (in print).

Klumpp D, Braudmeier-Fleming A, Yaggie R, Bachrack L, Flury S, Marko D, Berry M, Welge M, Bushell C, White B, Schaeffer A. PD20-09 Altered Microbiome in Chronic Pelvic Pain Patients. The Journal of Urology. 2015 Apr 1;193(4):e401.

Hagler MA, Thalji NM, Russell N, Welge M, Bushell C, Berry M, White BA, Suri RM, Miller JD. Abstract 19746: Identification of Novel microRNA Profiles in Patients With Myxomatous Mitral Valve Disease. Circulation. 2015 Nov 10;132(Suppl 3):A19746–A19746.

 

WHITE PAPERS

Groves P, Berry M. OmiXschema and Durable Core [Internet]. 2017 Nov.

Available from: http://www.visari.org/architecture.html.

INVITED PRESENTATIONS

Welge, M., Degnim, A. “Predicting Breast Cancer Risks in Women with Benign Breast Biopsies,“ Presentation, Computation Surgery Symposium, Mayo Clinic, (July 2016). Invited Speaker

Bushell, C. “User Interface Development for Analytics and Knowledge Network,” Presentation, NIH Consortium Meeting, IGB,  University of Illinois, Champaign IL. (Jan 8, 2016).

Welge, M., “Machine Learning Approaches for High-dimensional Data and Small Sample Sizes.”  Visiting Research Presentation, Center for Individualized Medicine, Mayo Clinic, Rochester MN, (July 7, 2016)

Bushell, C., “Visual Analytics for Precision Medicine,” Mayo Administration and Ventures Visit Presentation. Coordinated Science Lab, UIUC (March 2016)

POSTERS

Chen, K., Zhao, Y., Rossi, G., Heironymi, K., Liu, X., Miller, M., Auvil, L., Welge, M., Bushell, C., Smith, R., Madak-Erogan, Z., “Bazedoxifene and Conjugated Estrogen Combination Improves Gut-liver Axis Health” ENDO 2017 Conference, Endocrine Society, Orlando FL (April 1-4, 2017). Poster Presentation.

C. Blatti, M. Berry, L. Gatzke, A. Emad, N. Sobh, C. Bushell, S. Sinha, “KnowEnG Cloud-based Scalable Anlaytics Suite.” BD2K All Hands Meeting 2016, NIH, Bethesda MD , Poster Session (Nov 2016).

M. Manjunath, Y. Zhang, S. Yeo, O. Sobh, N. Russell, C. Followell, C. Bushell. U. Ravaioli, J. Song, “KnowEnG Tools for Barrier-free Learning of Genomic Data Clustering.” BD2K All Hands Meeting 2016, NIH, Bethesda MD , Poster Session (Nov 2016).

Bushell, C., Chia, N, et. al. “Visual Analytics for Exploring and Reporting Patient Microbiome.” Center for Individualized Medicine Conference, Mayo Clinic, Rochester MN (Oct 4-7, 2016). Poster Presentation.

Blatti, C., Emad, A., Gatzke, L, Berry, M., Bushell, C., et. al. “Gene Set Characterization Pipeline,” NIH Site Visit, Institute of Genomic Biology, UIUC, Champaign, IL, Poster Session, (May 2016).

Bushell, C., Gatzke, N. Russell. et. al. “MEDS for Understanding Multidimensional Data” NIH Site Visit, Institute of Genomic Biology, UIUC, Champaign, IL, Poster Session, (May 2016).

Robison, H., Valera, E., Erskine, C., Auvil, L., Escalante, P., Bailey, R. “Profiling Cytokine-Chemokine Dynamics Using Silicon Photonic Microring Resonators.” Bioorganic Chemistry, Gordon Research Conference, Andover, NH (Jun 5-10, 2016).

Bushell, C., Gatzke, L, Berry, M. et. al. “KnowEng Visualization,”  NIH BD2K All-Hands Meeting, Poster Presentation, NIH Bethesda MD, (Nov 2015).

Welge, N. Russell, N., Bushell, C. et. al. “A Method Comparison Case Study with Myxomatous Mitral Valve Disease.” From Practice to Promise, Center for Individualized Medicine Conference, Mayo Clinic, Rochester MN (Sept, 2015). Poster Presentation.

Guetterman, H., Auvil, L., Welge, M, et. al. “Dietary Predictors of the Human Gastrointestinal Microbiome.” From Practice to Promise, Center for Individualized Medicine Conference, Mayo Clinic, Rochester MN (Sept, 2015). Poster Presentation.

Welge, M., C. Bushell, N. Russell, B.White, et. al. “Feature Interaction Detection with Random Forests in a High Dimensional Microbiome Setting.” Medical Research Day, College of Medicine, UIUC. (April 2015) . Poster Presentation.

Welge, M., C. Bushell, N. Russell, B.White, et. al. “Feature Interaction Detection with Random Forests in a High Dimensional Microbiome Setting.” From Practice to Promise, Center for Individualized Medicine Conference, Mayo Clinic, Rochester MN (Oct 5-8, 2014). Poster Presentation (note date prior to ARI, but this was an ARI funded project while we were still at NCSA).

Schahl, K., C. Bushell, L. Gatzke, M. Ferber. “Data Visualization in Reporting Next Generation Sequencing Results.” Poster Session, American College of Medical Genetics and Genomics ACMG Annual Clinical Genetics Conference, Phoenix, AZ (March 19-23, 2013).

 

 

FEATURED POSTERS

Dietary Predictors of the Human Gastrointestinal Microbiome

Patient Microbiome: Visual Analytics for Explaining and Reporting Patient Microbiome

KnowEng Cloud-based Scalable Analytics Suite

A Method Comparison Case Study with Myxomatous Mitral Valve Disease

VI-BIO - Visual Intelligence for Biology

NCSA  |  UNIVERSITY OF ILLINOIS